#INPUT_BAM=/Users/nemesh/dropseqrna/transcriptome_java/public/testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG2_retagged.bam	INPUT_VCF=/Users/nemesh/dropseqrna/transcriptome_java/public/testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG2.vcf	DONOR_FILE=testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/donors.txt	CELL_BC_FILE=testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG2_retagged.cellBarcodes.txt	GQ_THRESHOLD=30	FRACTION_SAMPLES_PASSING=0.5	FORCED_RATIO=0.8	USE_MISSING_DATA=false	READ_MQ=10	FIXED_ERROR_RATE=0.1	MAX_ERROR_RATE=NA	LOCUS_FUNCTION=[CODING, UTR]	PAIRS_TO_TEST=5
cell	sampleOneMixtureRatio	sampleOne	sampleOneLikelihood	sampleTwo	sampleTwoLikelihood	mixedSample	mixedSampleLikelihood	num_paired_snps	num_inform_snps	num_umi	num_inform_umis	lr_test_stat	sampleOneWrongAlleleCount	num_homozygous_inform_umis_s1	sampleTwoWrongAlleleCount	num_homozygous_inform_umis_s2	bestLikelihood	bestSample	doublet_pval	bestLikelihoodScaled
TTTGCGCGGAGC:ATTGTTTAGGAG	0.533	HUES53	-135.12888390916729	NKX	-142.8844014678374	HUES53:NKX	-112.7892528803782	381	245	550	349	22.339631028789086	62	199	72	206	-112.7892528803782	HUES53:NKX	1.0	-112.7892528803782
TTTGCGCGGAGC:ATTGTTTAGGAG	0.789	HUES53	-134.03736892804594	HUES62	-170.4322793086881	HUES53:HUES62	-130.26776165409225	378	225	547	304	3.7696072739536817	61	166	97	158	-130.26776165409225	HUES53:HUES62	0.9998300508832593	-130.26776165409225
TTTGCGCGGAGC:ATTGTTTAGGAG	0.8	HUES53	-135.12888390916729	HUES63	-182.23312196535602	HUES53:HUES63	-134.12340851746524	381	223	550	336	1.0054753917020491	62	194	102	159	-134.12340851746524	HUES53:HUES63	0.9101274957434964	-134.12340851746524
TTTGCGCGGAGC:ATTGTTTAGGAG	0.8	HUES53	-135.12888390916729	HUES64	-174.97603187810023	HUES53:HUES64	-132.3479907463849	381	209	550	309	2.7808931627823767	62	179	96	150	-132.3479907463849	HUES53:HUES64	0.998346561052171	-132.3479907463849
