#INPUT_BAM=/Users/nemesh/dropseqrna/transcriptome_java/testdata/org/broadinstitute/dropseq/private/barnyard/digitalallelecounts/sampleassignment/small_data_retagged.sam	INPUT_VCF=/Users/nemesh/dropseqrna/transcriptome_java/testdata/org/broadinstitute/dropseq/private/barnyard/digitalallelecounts/sampleassignment/test_missing_data.vcf.gz	DONOR_FILE=null	CELL_BC_FILE=null	GQ_THRESHOLD=30	FRACTION_SAMPLES_PASSING=0.5	READ_MQ=10	FIXED_ERROR_RATE=NA	MAX_ERROR_RATE=0.1	LOCUS_FUNCTION=[CODING, UTR]
cell	num_snps	num_umis	ratio	pvalue	FDR_pvalue	bestLikelihood	bestSample	median_likelihood	population_average_likelihood	BAR	BAR2	FOO	FOO2	MISSING
TTGCCTTACGCG	2	4	2.3602E-1	5.3767E-1	5.4149E-1	-6.9357E-1	FOO2	-1.1373E0	-9.2959E-1	-1.6478E0	-1.1373E0	-1.6478E0	-6.9357E-1	-9.2959E-1
ATCAGGGACAGA	2	4	0E0	5.4149E-1	5.4149E-1	-7.2276E-1	BAR	-1.5002E0	-1.5002E0	-7.2276E-1	-3.8E0	-7.2276E-1	-2.6021E0	-1.5002E0
