all:

THISDIR:=$(dir $(realpath $(lastword $(MAKEFILE_LIST))))
-include ${CURDIR}/defines.mk
include ${THISDIR}/../rules.mk

CXXOPTS  += -std=c++11 -pedantic -Wall -Wextra -Wno-overloaded-virtual
SYSINCLUDES = ${HDF5_INC} ${PBBAM_INC} ${HTSLIB_INC} ${BOOST_INC}
LIBS     += ${LIBPBDATA_LIB} ${HDF5_LIB} ${PBBAM_LIB} ${HTSLIB_LIB} ${ZLIB_LIB}
LDFLAGS  += $(patsubst %,-L%,${LIBS})
LDLIBS += -lpbdata -lhdf5 -lhdf5_cpp

all: static shared
static: libpbihdf.a
shared: libpbihdf${SH_LIB_EXT}

paths := . ${THISDIR}
sources := $(wildcard ${THISDIR}*.cpp)
sources := $(notdir ${sources})
objects := $(sources:.cpp=.o)
shared_objects := $(sources:.cpp=.shared.o)
dependencies := $(objects:.o=.d) $(shared_objects:.o=.d)

vpath %.cpp ${paths}

libpbihdf.a: $(objects)
	$(AR) $(ARFLAGS) $@ $^

libpbihdf${SH_LIB_EXT}: $(shared_objects)

clean: 
	rm -f libpbihdf.a libpbihdf.so *.o *.d

-include $(dependencies)
depend: $(dependencies:.d=.depend)
